Teichmann Group's repositories
scg_lib_structs
Collections of library structure and sequence of popular single cell genomic methods
celltypist
A tool for semi-automatic cell type classification
Genes2Genes
Aligning gene expression trajectories of single-cell reference and query systems
celltypist_wiki
Materials and scripts for building cell type encyclopedia table
visium_stitcher
Stitch multiple Visium slides together
limbcellatlas
This repository contains codes used for the human fetal limb cell atlas.
gene2probe
Pipeline for designing custom probes against human genes
thymus_spatial_atlas
general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!
ALI_COVID19
Repo with analysis code for the ALI_COVID19 paper
treg-gut-niches
Data pre-processing and analysis scripts for the article "Immune microniches shape intestinal Treg function"
G2G_notebooks
Analysis notebooks for G2G MS
GeneDistFinder
Alignment tests for reference and query single cell datasets
iss_patcher
Approximate missing features from higher dimensionality data neighbours
lung-immune-cell-atlas
This is a folder containing information of the human fetal lung leukocyte atlas
PanGIAtlas
Integration of gut cell atlases
multi-view-atlas
Multi-view objects for annotation and mapping to single-cell atlases
vascular_atlas
Repo with analysis code for the vascular atlas paper