Teichmann Group

scg_lib_structs

Collections of library structure and sequence of popular single cell genomic methods

celltypist

A tool for semi-automatic cell type classification

SpatialDE

Test genes for Spatial Variation

tracer

TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data

cellhint

A tool for semi-automatic cell type harmonization and integration

drug2cell

Gene group activity utility functions for Scanpy

bracer

BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data

bin2cell

Join subcellular Visium HD bins into cells

cell2tcr

Inference of TCR motifs

Genes2Genes

Aligning gene expression trajectories of single-cell reference and query systems

sctk

celltypist_wiki

Materials and scripts for building cell type encyclopedia table

visium_stitcher

Stitch multiple Visium slides together

limbcellatlas

This repository contains codes used for the human fetal limb cell atlas.

gene2probe

Pipeline for designing custom probes against human genes

TissueTag

Python package to interactively annotate histological images within a jupyter notebook

thymus_spatial_atlas

general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!

ALI_COVID19

Repo with analysis code for the ALI_COVID19 paper

COVID-19_Challenge_Study

SKM_ageing_atlas

snp2cell

cell type specific, trait-associated gene regulation

treg-gut-niches

Data pre-processing and analysis scripts for the article "Immune microniches shape intestinal Treg function"

COVID-19paed

G2G_notebooks

Analysis notebooks for G2G MS

GeneDistFinder

Alignment tests for reference and query single cell datasets

iss_patcher

Approximate missing features from higher dimensionality data neighbours

lung-immune-cell-atlas

This is a folder containing information of the human fetal lung leukocyte atlas

PanGIAtlas

Integration of gut cell atlases

multi-view-atlas

Multi-view objects for annotation and mapping to single-cell atlases

vascular_atlas

Repo with analysis code for the vascular atlas paper