SainsburyWellcomeCentre / aeon_mecha

Project Aeon's main library for interfacing with acquired data. Contains modules for raw data file io, data querying, data processing, data qc, database ingestion, and building computational data pipelines.

SainsburyWellcomeCentre/aeon_mecha Issues

Use Block Due Time from `Environment_BlockState` in ingestion
Closed 21 days ago1
Info for 'start' and 'end' phases within a social experiment should be saved in a table in db
Updated 21 days ago
Small updates to block plots
Updated 21 days ago
Pose reader assumes all models are trained on the same HPC node
Closed 21 days ago1
Prototype design for ephys management and spike-sorting tasks
Updated 22 days ago
Clean up branch for sfn
Closed 25 days ago3
Add behavioral ethogram to blockplots
Updated a month ago
Info to add to db
Updated a month ago
Update 'weighted patch preference' block plot
Updated a month ago
Add table for foraging bouts in BlockAnalysis
Updated a month ago
Find nested key breaks if inner value is None
Closed a month ago
Inconsistent finding of identities can crash Pose reader
Closed a month ago
Avoid storing pose reader metadata in remote storage
Closed a month ago
Round all wheel values down to nearest 0.1cm in block analysis tables on db
Updated a month ago
Avoid expensive processing operations when loading dense pose data
Updated a month ago1
Full pose sleap data for individual sessions
Updated a month ago1
add docstrings to all modules and remove skipping ruff d100 and d104 checks from pyproject toml
Updated a month ago
Consider moving datajoint test config module
Closed a month ago
Database storage concerns
Updated a month ago
Overhaul linting and formatting
Closed a month ago
Add static type checker to CI
Closed a month ago
Ingest combined full pose and ID sleap data
Closed 2 months ago
Load blob tracking data for animal position when missing SLEAP data
Updated 2 months ago3
Block Analysis Todos
Updated 2 months ago
Optimization of database storage
Updated 2 months ago17
Add threshold-specific pellet delivery timestamps as dj table
Updated 2 months ago1
Incorrect prioritization of multiple input root directories when calling `api.load()`
Closed 2 months ago6
Add experiment name to animal comment in pyrat
Updated 2 months ago
Add reader for 'Environment_ActiveConfiguration' stream
Updated 2 months ago
No SLEAP data found in some chunks
Closed 2 months ago4
Installing from main branch using pip reports missing packages
Closed 3 months ago
Sleap model dir needs to be saved to metadata.yml
Closed 4 months ago3
Update pose reader to output string subject names directly, from config file, rather than the int class values
Closed 4 months ago
Update pose reader to account for new format of Bonsai.Sleap v0.3
Closed 4 months ago1
Generalizing the low-level data API for ephys data
Updated 4 months ago
Create a "processed SLEAP data" table in database
Updated 4 months ago4
Review `block_ends` in block_analysis.Block
Updated 5 months ago
Multiple patch rates and offsets found in one patch for one block
Updated 5 months ago4
Add reader for CameraLightMonitor stream
Updated 5 months ago
`activepatch` returns df with MultiIndex instead of the expected DatetimeIndex
Updated 5 months ago
Block State - pellet time does not belong to any epoch
Closed 6 months ago2
`load()` tries to return indices it may not have
Updated 6 months ago12
Merge social branch into main post #342 merge
Closed 7 months ago1
KeyError instances from
Updated 7 months ago5
Add Patch Preference calculations to block_analysis
Updated 8 months ago
Create a general function to assign events to subjects
Updated 8 months ago
Update Aeon environment set-up instructions
Updated 9 months ago
`SubjectVisits` stream cannot be loaded due to KeyErrors
Closed 9 months ago5
Model dir filepath should be saved to `metadata.yml`
Closed 9 months ago1
Optimize pose reader
Updated 9 months ago