Synergistic Discovery and Design

apply-recursive-pems-reactor

Applies permissions recursively. More reliable that the baseline Agave files recursive flag.

contain_yourself

Convenience wrapper around Singularity exec and Compute-oriented Docker run

heuristomancer

jupyter-ascendant

Application code for launching Jupyter @ TACC HPC integrated with SD2E environment

Q0-etl-coordinate

Coordination and management of Q0 ETL Sprint

sd2ify

Chrome extension to simplify sharing links within the SD2 program.

sd2nb-app

Simple application for sharing notebooks within the SD2E Jupyter Environment

templates

App Templates used by Portainer

fcs-etl-application

Flow cytometry ETL application.

fcs-etl-reactor

Reactor that processes data and config files and launches fcs-etl-application

fcs-etl-reactor-example

Example configuration and data files for fcs-etl-reactor.

demo-mailbot-reactor

Demo Mailbot using Q22018 reactors module

dnaseq-etl-application

App that will house the dnaseq etl process.

lcms-pyquant-application

libsbol-docker

platereader-etl-specs

Specification for plate reader ETL metadata

portal-app-tray-mgr

For managing the SD2E Discovery Workspace app catalog

requestbin

Inspect HTTP requests. Debug webhooks. Originally created by @progrium.

rnaseq-application

rnaseq-broad-application

ta3-scripts

A home for shared TA3 scripts mostly for data transfer. Expected to be orphaned when data transfer is finalized.

validate-manifest-reactor

Validate an SD2E manifest uploaded to a TACC S3 endpoint