Synergistic Discovery and Design's repositories
sbol-dictionary-maintainer
Synchronize lists of key reagents, constructs, strains, etc. between a Google Sheets dictionary and SynBioHub
api-user-guide
Docs for SD2E core platform and additional integrated web service APIs
reactors-etl
Source code and test material for developing ETL components for use in SD2E
jenkins-integration
For coordinating/demonstrating Jenkins-based data CI
sbol-dictionary-writer
API for writing to lists of key reagents, constructs, strains, etc. jointly maintained between a Google Sheets dictionary and SynBioHub
aliases-cli
A manager for App and Reactor aliases
demo-jobs-enabled-reactor
Example of a Reactor with support for Pipeline Jobs
demo-sender-reactor
Illustrates how to send a message to another Reactor
s3-docs-tests
Documentation and test material for SD2E S3 service
sbh-prospector
Allow exploration of a SynBioHub database
TASBEFlowAnalytics
Flow cytometry unit conversion and analytics
base-images-custom
Extended base images maintained by SD2 program participants
datacatalog-docs
User and developer docs for SD2E Data Catalog
demo-listener-reactor
Publicly accessible Reactor to help validate messaging receiving behavior
infrastructure-agent-ansible
Ansible role for installing New Relic Infrastructure agent
json-schema-viewer
JavaScript tool for visualizing JSON schemas
jsonmerge
Merge a series of JSON documents.
jsonschema2md
Convert Complex JSON Schemas into Markdown Documentation
metadata-converter
(Mirror) Converts lab-provided sample traces to project metadata schema
metadata-loader
(Mirror) Loads a file in Sample-Set schema into the Data Catalog
pipelinejobs-agave-proxy
(Mirror) Provides a generalized interface to run Agave jobs in the PipelineJobs framework
pipelinejobs-system
Metarepo for building the PipelineJobs System ReadTheDocs
pipelines-manager
(Mirror) Manages enrollment of and updates to Pipeline definitions
s3-user-guide
Details on uploading experiment data via TACC S3
ta3-upload-library
Reactor(s) for uploads from UW BIOFAB to TACC.
uploads-agent
Coordinates TACC S3 uploads, Abaco-mediated data movement, and MongoDB-based persistence to represent the state of file uploads.
uploads-indexer
(Mirror) Captures and stores fixity information for "Level 0" data in the Data Catalog
uploads-manager
(Mirror) Automatically copies files uploaded to designated TACC S3 buckets to their respective Agave-managed storage resource.
xplan_to_sbol
Converts experiment plans in the JSON format generated by xplan_api to the Synthetic Biology Open Language (SBOL).