Synergistic Discovery and Design (SD2E)

Synergistic Discovery and Design

SD2E

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Home Page:http://www.sd2e.org/

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Synergistic Discovery and Design's repositories

sbol-dictionary-maintainer

Synchronize lists of key reagents, constructs, strains, etc. between a Google Sheets dictionary and SynBioHub

api-user-guide

Docs for SD2E core platform and additional integrated web service APIs

reactors-etl

Source code and test material for developing ETL components for use in SD2E

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jenkins-integration

For coordinating/demonstrating Jenkins-based data CI

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sbol-dictionary-writer

API for writing to lists of key reagents, constructs, strains, etc. jointly maintained between a Google Sheets dictionary and SynBioHub

aliases-cli

A manager for App and Reactor aliases

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demo-jobs-enabled-reactor

Example of a Reactor with support for Pipeline Jobs

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demo-sender-reactor

Illustrates how to send a message to another Reactor

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redash

Connect to any data source, easily visualize, dashboard and share data

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s3-docs-tests

Documentation and test material for SD2E S3 service

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sbh-prospector

Allow exploration of a SynBioHub database

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TASBEFlowAnalytics

Flow cytometry unit conversion and analytics

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base-images-custom

Extended base images maintained by SD2 program participants

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datacatalog-docs

User and developer docs for SD2E Data Catalog

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demo-listener-reactor

Publicly accessible Reactor to help validate messaging receiving behavior

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infrastructure-agent-ansible

Ansible role for installing New Relic Infrastructure agent

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json-schema-viewer

JavaScript tool for visualizing JSON schemas

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jsonmerge

Merge a series of JSON documents.

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jsonschema2md

Convert Complex JSON Schemas into Markdown Documentation

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metadata-converter

(Mirror) Converts lab-provided sample traces to project metadata schema

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metadata-loader

(Mirror) Loads a file in Sample-Set schema into the Data Catalog

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pipelinejobs-agave-proxy

(Mirror) Provides a generalized interface to run Agave jobs in the PipelineJobs framework

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pipelinejobs-system

Metarepo for building the PipelineJobs System ReadTheDocs

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pipelines-manager

(Mirror) Manages enrollment of and updates to Pipeline definitions

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s3-user-guide

Details on uploading experiment data via TACC S3

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ta3-upload-library

Reactor(s) for uploads from UW BIOFAB to TACC.

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uploads-agent

Coordinates TACC S3 uploads, Abaco-mediated data movement, and MongoDB-based persistence to represent the state of file uploads.

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uploads-indexer

(Mirror) Captures and stores fixity information for "Level 0" data in the Data Catalog

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uploads-manager

(Mirror) Automatically copies files uploaded to designated TACC S3 buckets to their respective Agave-managed storage resource.

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xplan_to_sbol

Converts experiment plans in the JSON format generated by xplan_api to the Synthetic Biology Open Language (SBOL).

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