Synergistic Discovery and Design's repositories
test-harness
GitHub mirror of https://gitlab.sd2e.org/sd2program/test-harness
experimental-intent-parser
A tool that combines a word-processing interface with structured tables and assisted linking to definitions to provide a simple interface for incremental codification of experiment designs.
pysd2cat
Python SD2 Circuit Analysis Tool
rna-seq-pipeline
This is the automated RNA-seq processing pipeline used by the SD2 program
python-datacatalog
(Mirror) Python package containing core business logic and helper utilities for Data Catalog
omics_tools
Mirror of SD2E omics_tools
jupyteruser-sd2e
Dockerfile (and build/test support) for extending SD2E Jupyter Notebooks base image
bacanora
Accelerated, tenacious versions of key Agave operations
sbh-metrics
Metrics gleaned from SynBioHub
base-images
Consolidated repository for building and improving SD2E's various Docker base images
pipelinejobs-indexer
(Mirror) Indexes outputs from a PipelineJob so they are discoverable in the Data Catalog
OPIL-specification
Open Protocol Interface Language (OPIL) specification document
rsync-work-app
Tapis app that uses rsync on a personal executionSystem to migrate your /work directory to /work2
pipelinejobs-manager
(Mirror) Manages creation and management of, as well as updates to, Pipelines system jobs.
cp-request-api
A Python package for structured experimental (aka, challenge problem) requests