PeteHaitch

The-Art-of-Linear-Algebra

Graphic notes on Gilbert Strang's "Linear Algebra for Everyone"

Plex-Audiobook-Guide

A walkthrough for optimal Audiobook experience using Plex

webr

The statistical language R compiled to WebAssembly via Emscripten, for use in web browsers and Node.

rig

The R Installation Manager

spacexr

Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

chromap

Fast alignment and preprocessing of chromatin profiles

rcityviews

rcityviews is a user-friendly R interface for creating stylized city maps using OpenStreetMap (www.openstreetmap.org) data, implemented as an R package and a Shiny web application.

kana

Single cell analysis in the browser

CellTrek

metacells

Metacells - Single-cell RNA Sequencing Analysis

CARD

TileDB-SOMA

Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.

SuperCell

Coarse-graining of large single-cell RNA-seq data into metacells

starBliss

Create beautiful, print quality maps of the night sky in R

quasildr

Quasilinear data representations for single-cell omics data analysis

speckle

R package for specialised analysis of single cell data

samui

A performant scientific image visualization system.

DropletQC

Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data

generecovery

mapBliss

Create Beautiful Maps Of Your Adventures With Leaflet In R.

cellhashR

An R package designed to demultiplex cell hashing data

sparrow

Take command of your set enrichment analyses.

spatial

Single-Cell Spatial Explorer

BGI_vs_Illumina_Benchmark

This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for single-cell RNA-sequencing" by Senabouth et al.

GMM-Demux

scran.chan

A slimmed down version of scran, based on the C++ library of the same name.

scDist

Robust identification of perturbed cell types in single-cell RNA-seq data

mgikit

mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.

sgdGMF

Efficient stochastic gradient descent algorithms for the estimation of generalized matrix factorization models in R.

CELSeq-pipeline

Pipeline for processing CEL-seq and minibulk data from raw reads to count matrix.