PeteHaitch

DelayedMatrixStats

A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package

methtuple

methtuple is a methylation caller for methylation events that co-occur on the same DNA fragment from high-throughput bisulfite sequencing data, such as methylC-seq.

BioC2020_DelayedArray_workshop

Workshop on effectively using the DelayedArray framework to support the analysis of large datasets

GenomicTuples

Representation and Manipulation of Genomic Tuples in R

MethylSeqData

Collection of Public DNA Methylation Sequencing Datasets

paper-summaries

Summaries of papers I done read

personal_website

alevinQC

Create QC and summary reports for Alevin output

atena

Analysis of transposable elements

BGI_vs_Illumina_Benchmark

This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for single-cell RNA-sequencing" by Senabouth et al.

BioC2020

BioC2020: Where Software and Biology Connect

BioC2021_DelayedArray_workshop

About Workshop on effectively using the DelayedArray framework to support the analysis of large datasets

bioconductor-teaching

Bioconductor teaching working group

bioimagebook.github.io

An introduction to bioimage analysis - http://bioimagebook.github.io

bsseq

Devel repository for bsseq

fgbio

Tools for working with genomic and high throughput sequencing data.

iSEE

R/shiny interface for interactive visualization of data in SummarizedExperiment objects

kana

Single cell analysis in the browser

large-scale-data-base

Base Rmd files for Orchestrating Large-Scale Data Analysis in Bioconducotr

making_bioconductor_pkg

MicrobiotaProcessWorkshop

The workshop of microbiome datasets analysis using MicrobiotaProcess

RBioFormats

:books: R interface to the Bio-Formats library

redis

Redis is an in-memory database that persists on disk. The data model is key-value, but many different kind of values are supported: Strings, Lists, Sets, Sorted Sets, Hashes, Streams, HyperLogLogs, Bitmaps.

renv_example

rprimer

scater

Clone of the Bioconductor repository for the scater package.

scRNA-seq-workshop

single cell RNA-seq analysis workshop

scuttle

Clone of the Bioconductor repository for the scuttle package.

SingleCellExperiment

Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.

SingleR

Clone of the Bioconductor repository for the SingleR package.