NationalGenomicsInfrastructure/piper Issues
Coverage not correct
Updated 3Update VQSR parameters
ClosedUpdate bwa
ClosedError in README
ClosedGenerate snpEff html
UpdatedLess memory for samtools sort
Closed 3Picard metrics file deleted
Closed 4UPPMAX: Memory overflow error
Closed 4Add snpEff
Closed 22Upgrade to Qualimap 2.0
Closed 4Update to GATK 3.3
ClosedFastQC added into Piper
Updated 2Question for the man
Closed 2Genotype concordance error
Closed 1setupFileCreator regex bug
Closed 1Report of versions
Closed 2Piper return code
Closed 4sthlm2UUSNP NoClassDefFound
Closed 3sthlm2UUSNP problem on M.Kaller
Closed 17Running piper on M.Kaller_14_06
Closed 7SetupFileCreator problem
Closed 5Update to GATK version 3.2-2
Closed 1Qualimap fails
Closed 3