NationalGenomicsInfrastructure / piper

A genomics pipeline build on top of the GATK Queue framework

Update VQSR parameters

johandahlberg opened this issue 10 years ago · comments

Johan Dahlberg commented 10 years ago

I found the following announcement that StrandOddsRatio should replace FisherStrand for VQSR: http://gatkforums.broadinstitute.org/discussion/4958/best-practices-vqsr-parameters-updated#latest