Nate Johnson's repositories
UMayor-bioinformatics
Teaching files for the DGI-program bioinformatics class
layermap
A modular heatplot library for R-base graphics
shared-degs
Generating shared DEGs based on a collection of DE-seq analyses
OctoPrint
OctoPrint is the snappy web interface for your 3D printer!
seq-pipeline
A toolset for storage-safe RNA-seq analyses
stack-to-base
A tool to search ShortStack sRNA annotations against miRBase
sRNA-jbrowse
A set of processing scripts for setting up jbrowse with ShortStack sRNA-data
hmmer-to-table
A simple tool for converting hmmer outputs to a complete table
bam-to-sizes
A simple python script to quantify abundances of aligned reads by size and readgroup.
GSTAr_mp
Multi-processor wrapper for the GSTAr sRNA aligner
GF-sRNA-discovery
Clustering and condensing sRNAs to their most expressed variants without use of a genome
sRNA-supfam-cluster
Clusters sRNA sequences by edit distance, nominally into superfamilies
sRNA-lib-simulator
Generates simulated plant sRNA-seq data based on real input libraries