NAL-i5K / tripal_eutils

ncbi loader via the eutils interface

NAL-i5K/tripal_eutils Issues

PHP deprecation
Closed a year ago1
tripal_eutils does not have a version number in /admin/reports/updates
Closed 2 years ago1
Error if linked records are not yet public
Closed 2 years ago1
PHP8 errors
Closed 2 years ago1
Namespace and functionality conflict with Tripal Analysis Expression
Closed 2 years ago2
Remove dependency on tripal_manage_analyses module
Closed 2 years ago1
Incorrect parameters passed to tripal_report_error()
Closed 2 years ago8
contacts are created but are not linked to projects
Updated 2 years ago2
Incorrect analysis links generated if more than one assembly loaded in one drush run
Closed 2 years ago1
Assembly with a missing "Assembly method" field triggers a "Not null violation" error
Closed 2 years ago1
Invalid name syntax error
Updated 2 years ago
Feature Request - Batch import
Updated 2 years ago1
Allow loading more than one record at a time
Closed 2 years ago1
FTP Timeouts
Closed 2 years ago1
Error if CV term does not exist
Closed 2 years ago2
NCBI Data loader warning
Closed 4 years ago4
Undefined table: arraydesign
Closed 5 years ago4
API Key Validation
Updated 5 years ago1
NCBI data loader execution warning and error
Updated 5 years ago
require_once() fail to open includes/tripal_eutils_import.form.inc
Closed 5 years ago
EUtilsBioProjectFormatter->formatLinkedRecords($accessions) prints types
Closed 5 years ago2
can/should we do the cross database searching the way NCBI does
Updated 5 years ago
module rating
Updated 5 years ago1
chado API
Updated 5 years ago2
list custom tables created in install
Closed 5 years ago1
example created records
Closed 5 years ago2
create 7.x-1.0 release
Closed 5 years ago
Undeclared dependency: Module requires Chado 1.3
Closed 5 years ago5
make sure biosample attribute list download is in documentation
Closed 5 years ago1
do we need an SRA importer?
Updated 5 years ago1
log status to the job console
Closed 5 years ago2
tripal importer instead of base form
Closed 5 years ago
Assembly xrefs vs primary accessions vs linked records
Closed 5 years ago3
notify admins of pubs attached to project when inserting assembly
Closed 5 years ago
new assembly type
Closed 5 years ago1
discrep between formatter and inserted records
Closed 5 years ago8
will secondary records have all necessary associations?
Closed 5 years ago1
verify primary cross_ref added for each content type
Closed 5 years ago
use the stats instead of report file for EFTP class
Closed 6 years ago
ontology type term: bioproject
Updated 6 years ago
what should we do when we dont know how to link something
Closed 6 years ago2
no biosample created when running analysis
Closed 6 years ago2
description not always added for biosample
Closed 6 years ago1
error creating assembly if no assembly tag on FTP summary
Closed 6 years ago2
biosample contact import needs improvement
Updated 6 years ago1
exhaustive testing of linked import
Closed 6 years ago2
undefined properties
Closed 6 years ago3
unable to find UID for some bioprojects
Closed 6 years ago3
nonunique long form accessions prevent loading data
Closed 6 years ago2
error inserting biomaterial when already linked ot project
Closed 6 years ago