MuhammedHasan

gencode_utr_fix

Gencode UTR fix

betabinomial

Beta-Binomial for testing count data

figure_panel

gnomad_rocksdb

sklearn_utils

Utils I need for projects in scikit learn.

deepseajs

kipoiseq

Standard set of data-loaders for training and making predictions for DNA sequence-based models.

accelerate

🚀 A simple way to launch, train, and use PyTorch models on almost any device and distributed configuration, automatic mixed precision (including fp8), and easy-to-configure FSDP and DeepSpeed support

als-genes-literature

awesome-cancer-variant-databases

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

badges

:flower_playing_cards: Readme Badges – Gotta catch 'em all

bamread

Bam to Pandas DataFrame, quickly

cobrapy

COBRApy is a package for constraint-based modeling of biological networks

concise

Concise: Keras extension for regulatory genomics

fastbetabino

Superfast betabinomial fit implemented in Cython

hashcode-2022

hashcode-self-driving-rides

Hashcode 2018 challange

hashcode-slideshow-2019

keras

Deep Learning for humans

miRNA-binding-snakemake

MMSplice-fork

models

Model zoo for genomics

nvim

🥥 Neovim config, 100% Lua

personal-website

Porechop

adapter trimmer for Oxford Nanopore reads

pyranges

(beta) Performant Pythonic GenomicRanges

SPOT-RNA

RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.

TALON

Technology agnostic long read analysis pipeline for transcriptomes

TranscriptClean

Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome

TSVdb

TCGA Splicing Variation Database