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mortazavilab's repositories

PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)

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Technology agnostic long read analysis pipeline for transcriptomes

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Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome

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A Python library to visualize and analyze long-read transcriptomes

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Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.

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Topyfic: Reproducible latent dirichlet allocation (LDA) using leiden clustering and harmony for single cell epigenomics data

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Repository for commands used for the Swan manuscript

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References and analyses for updated TALON paper

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long-TUC-seq pipeline

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A repository containing files and scripts requested by the ENCODE DCC for data submission

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TUC-seq pipeline

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Systematic Phenotyping and Characterization of the 5xFAD mouse model of Alzheimer’s Disease

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