Manigben's repositories
Bison-Fly
Bison-Fly is the NDSU Spring Wheat UAV Pipeline developed in partnership with Drone2Phenome UAV community (D2P). In this pipeline we are presenting step by step how we have been applying UAV data on our breeding program. This is a open source R code from where anyone can use and adept for different crops. All suggestions are welcome. Help us to build this platform in partnership with Drone2Phenome community.
Bison-Fly_Workshop_01
Workshop presented at the 2022 NAPPN Annual Conference in Athens, Georgia. In this course, I present step-by-step how we leverage UAV data in our breeding program. This is open source R code that anyone may use and adopt for different crops and situations. The Bison-Fly tutorial is the NDSU Spring Wheat UAV Pipeline developed in partnership with Drone2Phenome (D2P). We hope this pipeline helps you with your research, and all suggestions to improve it are welcome.
BnaGWAS
GWAS platform for core collection of Brassica napus
emmax-pipeline
GWAS analysis process based on EMMAX software
FIELDimageR-Workshop-10
Workshop presented for NAPB. In this course, I went through the basic steps of the FIELDimageR pipeline showing how to evaluate and apply remote sensing data in plant breeding.
GAPIT3
Genome Association Predict Integrate Tools
GENESIS
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
GerminaR
Packages for graphics and index for seed germination ecophysiological evaluation
GP_Sorghumhybrids
Mixed model analysis of heterosis in a line x tester data, heritability estimation, variance component analysis and Genomic Prediction of hybrid performance and general combining abilities
inti
Tools and Statistical Procedures in Plant Science
LocusZooms
Make LocusZoom-like plots with your own LD matrix.
MendelPeaG2P
All codes associated with MendelPeaG2P project
meteostat-python
Access and analyze historical weather and climate data with Python.
Mini_Curso_GxE_pt
Repositório dedicado ao curso GxE ministrado para o grupo EuGeM da Universidade Federal de Goiás (UFG) em 26 de junho de 2021
Oat_Multi-omics_Prediction
R scripts for Oat_Multi-omics_Prediction
publication_perfect
Six hour hands-on to creating publication-quality plots in R
SAT
Package for sharing association test and analysis
SomeScript
There are some useful scripts.
statgenGxE
See https://biometris.github.io/statgenGxE/index.html for a full description
Sunflower-GWAS-v2
SAM panel GWAS pipeline
vit_predict
Optimal training population design and consensus sequence calculation, used for genomic prediction of vitamin content in maize