Manigben's repositories
Bison-Fly
Bison-Fly is the NDSU Spring Wheat UAV Pipeline developed in partnership with Drone2Phenome UAV community (D2P). In this pipeline we are presenting step by step how we have been applying UAV data on our breeding program. This is a open source R code from where anyone can use and adept for different crops. All suggestions are welcome. Help us to build this platform in partnership with Drone2Phenome community.
Bison-Fly_Workshop_01
Workshop presented at the 2022 NAPPN Annual Conference in Athens, Georgia. In this course, I present step-by-step how we leverage UAV data in our breeding program. This is open source R code that anyone may use and adopt for different crops and situations. The Bison-Fly tutorial is the NDSU Spring Wheat UAV Pipeline developed in partnership with Drone2Phenome (D2P). We hope this pipeline helps you with your research, and all suggestions to improve it are welcome.
Supplementary-File-1
Prediction using temporal phenotype data
draw-plots-qgis
Plugins to draw field experiment plots using R scripts in QGIS
Drone-Data-in-Agricultural-Research
Lessons on working with multispectral drone based data in agricultural research settings
FielDHub
FielDHub is an R Shiny design of experiments (DOE) app that aids in the creation of traditional, unreplicated, augmented and partially-replicated designs applied to agriculture, plant breeding, forestry, animal and biological sciences.
FIELDimageR-Workshop-10
Workshop presented for NAPB. In this course, I went through the basic steps of the FIELDimageR pipeline showing how to evaluate and apply remote sensing data in plant breeding.
GAPIT3
Genome Association Predict Integrate Tools
GENESIS
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
GerminaR
Packages for graphics and index for seed germination ecophysiological evaluation
GP_Sorghumhybrids
Mixed model analysis of heterosis in a line x tester data, heritability estimation, variance component analysis and Genomic Prediction of hybrid performance and general combining abilities
Heritability
Heritability in plant breeding - R and SAS code examples
IBSA
software for BSA-seq based on PyQt
inti
Tools and Statistical Procedures in Plant Science
metan
Package for multi-environment trial analysis
meteostat-python
Access and analyze historical weather and climate data with Python.
Mini_Curso_GxE_pt
Repositório dedicado ao curso GxE ministrado para o grupo EuGeM da Universidade Federal de Goiás (UFG) em 26 de junho de 2021
MrBeanApp
Web application
Oat_Multi-omics_Prediction
R scripts for Oat_Multi-omics_Prediction
pliman
Tools for Plant Image Analysis
PyBSASeq
A novel algorithm for BSA-Seq data analysis
statgenGxE
See https://biometris.github.io/statgenGxE/index.html for a full description
statgenSTA
See https://biometris.github.io/statgenSTA/index.html for a full description
vit_predict
Optimal training population design and consensus sequence calculation, used for genomic prediction of vitamin content in maize