Giters
KChen-lab
/
Monopogen
SNV calling from single cell sequencing
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Stargazers:
63
Watchers:
3
Issues:
57
Forks:
16
KChen-lab/Monopogen Issues
Installation error
Closed
4 months ago
Comments count
1
Error in Germline
Updated
4 months ago
Comments count
3
Whether SmartSeq data can be used with the Somatic function?
Closed
4 months ago
Comments count
3
Requires unsupported openssl version
Updated
4 months ago
Issues in the test file chr20.maester_scRNA.bam for somatic mutation calling
Updated
5 months ago
Comments count
4
preprocess error
Updated
5 months ago
Comments count
1
Tutorial Somatic Variant Calling Error for the cellScan step. Different output for different input to -t and -w? Potentially different reference file?
Updated
6 months ago
Comments count
1
About run data preprocess
Updated
6 months ago
Comments count
6
Error on somatic calling
Closed
6 months ago
Comments count
1
unable to run executables in /apps
Closed
8 months ago
Comments count
11
Error on gemline calling
Updated
6 months ago
Comments count
1
About Error for the cellScan step during Somatic Variant Calling
Updated
7 months ago
Comments count
1
nothing in the germline.vcf file
Updated
7 months ago
Comments count
2
Monopogen for mouse single cell sequence
Updated
7 months ago
Comments count
1
missing a space between flag and file name
Closed
7 months ago
Comments count
3
No sush file: chr20.gp.vcf.gz
Closed
8 months ago
Comments count
5
file chromosome comparisons
Closed
8 months ago
Comments count
1
chrX
Updated
8 months ago
Comments count
3
About ld refinement on putative somatic SNVs, spend a lot of time
Updated
8 months ago
Comments count
3
About run Somatic SNV calling from scRNA-seq
Closed
8 months ago
Comments count
2
About phased.vcf.gz generation during germline calling
Updated
8 months ago
Comments count
5
Error about data preprocess
Updated
8 months ago
Comments count
6
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte
Updated
8 months ago
Comments count
6
germline calling from multiple chromosomes
Updated
8 months ago
Comments count
2
About Somatic SNV calling from scRNA-seq
Updated
8 months ago
Comments count
2
typo in some of the code
Closed
9 months ago
Comments count
1
samtools mpileup
Updated
9 months ago
Comments count
1
can't decode byte 0x8b in position 1: invalid start byte
Closed
9 months ago
Comments count
2
Beagle multithreading
Updated
a year ago
error in chr20.gl.vcf, broken VCF record, incorrect # of columns
Updated
a year ago
"somatic mutation module is still in the development stage"
Updated
a year ago
Comments count
1