KChen-lab / Monopogen

SNV calling from single cell sequencing

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Requires unsupported openssl version

ArunaNannapaneni opened this issue · comments

(monopogen-env) anannapaneni@esb:~/Monopogen$ python ${path}/src/Monopogen.py
Traceback (most recent call last):
  File "/home/anannapaneni/Monopogen/src/Monopogen.py", line 13, in <module>
    import pysam
  File "/share/quonlab/workspaces/anannapaneni/anaconda3/envs/monopogen-env/lib/python3.12/site-packages/pysam/__init__.py", line 4, in <module>
    from pysam.libchtslib import *
ImportError: /home/anannapaneni/Monopogen/apps/libcrypto.so.1.0.0: version `OPENSSL_1.0.0' not found (required by /usr/lib/x86_64-linux-gnu/libcurl.so.4)

This is on a brand new conda environment with only pip instal -e .
It requires openssl 1.0.0 which is no longer supported