KChen-lab / Monopogen

SNV calling from single cell sequencing

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Monopogen for mouse single cell sequence

Lixinyoung opened this issue · comments

Can Monopogen be applied to Mus musculus or any other species?
If it is able to do it, can you show me how to do it? Like where I can prepare the WGS.vcf file.
If it is unable to do it, would you like to add this expansion on your to-do-list?

And which column Monopogen use to identify the single cell barcode?(My data do not have CR or CB column. )

Thank you.

Monopogen is not able to call SNVs on mouse species. It depends on the 1KG3 panel (only available for human)