JunjuanZheng

Machine-Learning

:zap:机器学习实战（Python3）：kNN、决策树、贝叶斯、逻辑回归、SVM、线性回归、树回归

pancancer

Building classifiers using cancer transcriptomes across 33 different cancer-types

tcga

Microbial analysis in TCGA data

rGREAT

GREAT Analysis - Functional Enrichment on Genomic Regions

GDCRNATools

GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC

BITFAM

BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequencing data. Please see Gao S et al., Genome Research (2021) https://genome.cshlp.org/content/31/7/1296 for details.

mediator

Causal mediation analysis in R

PEGASAS

Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)

BRCA-LRseq-pipeline

Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.

Myc-regulated_AS_PrCa_paper

Scripts for plotting figures and running analysis throughout the manuscript

CellPlot

R package for the integrated visualisation of functional enrichment and expression data.

my-learning

FOR my learing

Code_for_publications

Codes for publication

SCENA

Consensus Clustering of Single-cell RNA-seq Data by Enhancing Network Affinity

teaching

teaching material

sbas

CloudOS Digital Research Environment

C4A-network

Code accompanying the manuscript "Brain gene co-expression networks link complement signaling with convergent synaptic pathology in schizophrenia"

AS_APA_JoVE

Cancer-classification-TCGA

The Cancer Genome Atlas datbase | Cancer Classification | Deep Learning | CNN

CRC_data_mining

Discover Diagnostic and Prognostic lncRNA Signatures in Patients with Colorectal Cancer Using Machine Learning Algorithms.

Multiple-Cancer-Type-Prediction-with-TCGA-PanCancer-Atlas-data

AutoTCGA

Automatic machine learning of multidimensional biological data using tree-based models with application to immune-evasion events analysis in PanCancer

bioinformatics

some scripts to process transcriptomics and Chip-seq data

sbas-nf

Project

Cholestasis Systems BiologyProject

EveEcyGlaDE

Transcriptome sequencing of two Lake Baikal endemic (Eulimnogammarus verrucosus and E. cyaneus) and one Holarctic (Gammarus lacustris) transcriptome species from the Baikal region subjected to different stressors: scripts

NGS-project

RNA-seq: differential expression and splicing

ASE_MBNLd

Alternative Splicing on DM1 with MBNLdecoy AAV gene-therapy approach

TempSpac

Temporal and Spatial analysis

net-seq