JunjuanZheng

single-cell-papers-with-code

Papers with code for single cell related papers

chemprop

Message Passing Neural Networks for Molecule Property Prediction

Normal-Breast-Methylation

CaseStudies

Case Studies in Functional Genomics, practice

pro2022

DGCA

Differential Gene Correlation Analysis

pancan_aging

melanoma_network_codes

companion codes for publication

scCATCH

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

PathogenTrack

A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.

Yeskit

Yet another single-cell analysis toolkit

Awesome-Bioinformatics-Workflow-Chinese

Openbiox 翻译小组发起并维护的优秀 Workflow 翻译项目

F1000R_BiocWorkflows

Project for publishing from Bioconductor to F1000R and back

My_Blog

QCRI-SIDRA-ICR

Immune response signatures in cancer

EIF-analysis

ISPC

Code for the paper on the ICR immune signatures and prognostic significance pan-cancer (TCGA)

SDC

Sex Differences in Cancer

GEO

thresher

Read-only mirror of "thresher" from r-forge SVN.

OMCL--KIRC--oxidative

Using genomic and transcriptome analyses to identify the role of the oxidative stress pathway in renal clear cell carcinoma and its potential therapeutic significance

R-code

LFS-Early-Cancer-Onset-Prediction

DNA methylation predicts early onset of primary tumor in patients with Li-Fraumeni Syndrome

PeriNeural

BRCA_Classifier

XGBoost Breast cancer molecular subtype classifier applied on spatial RNA-Seq data

XGBLC

PathCNN

Interpretable convolutional neural networks on multi-omics data predict long-term survival in glioblastoma

KDD20-tutorial

Tutorial on Automated Machine Learning at KDD 2020

autogluon

Fast and Accurate ML in 3 Lines of Code

TNBC_analysis

Code to reproduce TNBC analysis and figures