JoaoSantinha

Medical_Image_Analysis_Workshop

Workshop on Medical Image Analysis using pydicom, SimpleITK, ITK, itkwidgets, numpy, seaborn, and matplotlib

SIIM21_BIP

SIIM 2021 Hands-On Sessionn on Basics of Imaging Processing

streamlit-leaderboard

Make simple competition leaderboard using streamlit in one file of code

Label_of_Physical_Point_Medical_Image

Python script that given a list of physical coordinates and a segmentation mask returns the corresponding labels of those coordinates

Radiogenomics_Gliomas_Pilot

apg

Accelerated proximal gradient in R

causalnex

A Python library that helps data scientists to infer causation rather than observing correlation.

cnn-hnscc

Deep learning based outcome modelling from CT scans of HNSCC patients

collageradiomics

Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by measuring entropy of co-occurrences of voxel-level gradient orientations on imaging computed within a local neighborhood.

deepscm

Repository for Deep Structural Causal Models for Tractable Counterfactual Inference

deid

best effort anonymization for medical images using python

dowhy

DoWhy is a Python library for causal inference that supports explicit modeling and testing of causal assumptions. DoWhy is based on a unified language for causal inference, combining causal graphical models and potential outcomes frameworks.

End2EndAI_IDH_Prediction

ICPSurv

Invariant Causal Prediction for Survival Data

itk-vtk-viewer

2D / 3D web image, mesh, and point set viewer using itk.js and vtk.js

joaosantinha.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

lightning-hydra-template

Deep Learning project template best practices with Pytorch Lightning, Hydra, Tensorboard.

MagiciansCorner

Notebooks, datasets, other content for the Radiology:AI series known as Magicians Corner by Brad Erickson

Niffler

Niffler: A DICOM Framework for Machine Learning and Processing Pipelines.

OWL

Implementation of the Ordered Weighted L1 Regularization in R with capabilities to run using caret train function.

owl_slope

:owl: Generalized Linear Models Regularized with the Sorted L1-Norm

pgmpy

Python Library for Inference (Causal and Probabilistic) and learning in Bayesian Networks

PhantomStudy

A multicenter study on radiomic features from T2-weighted images of a customized MR pelvic phantom setting the basis for robust radiomic models in clinics

pytorch-cnn-visualizations

Pytorch implementation of convolutional neural network visualization techniques

Radiomics_Size_Dependency

sasan

SASAN

SlicerNotebooks

Examples that illustrate how to use 3D Slicer via Jupyter notebooks in Python

SLOPE

Sorted L1 Penalized Estimation

streamlit-LASC

Viewers

OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages