JoaoSantinha / Label_of_Physical_Point_Medical_Image

Python script that given a list of physical coordinates and a segmentation mask returns the corresponding labels of those coordinates

Label_of_Physical_Point_Medical_Image

Python script that given a list of physical coordinates and a segmentation mask returns the corresponding labels of those coordinates

Dependencies

• SimpleITK - can be install using:

pip install SimpleITK

Examples of usage:

• Check which coordinates correspond to label 2 python ./model_tissue_id.py --csv <csv_filepath> --segmentation <segmentation_filepath> --output <output_filepath> --label 2

• Returns corresponding labels of provided coordinates python ./model_tissue_id.py --csv <csv_filepath> --segmentation <segmentation_filepath> --output <output_filepath> --label -1