JaerongA's repositories
nipype
Workflows and interfaces for neuroimaging packages
the-algorithm-ml
Source code for Twitter's Recommendation Algorithm
brainreg
Automated 3D brain registration with support for multiple species and atlases.
datajoint-tutorials
Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples
intanrhsreader
Python reader for .rhs data files
pynwb
A Python API for working with Neurodata stored in the NWB Format
Case-Studies-Python
An introduction to the practicing neuroscientist to data analysis in Python
best-of-ml-python
🏆 A ranked list of awesome machine learning Python libraries. Updated weekly.
element-calcium-imaging
DataJoint Element for multi-photon calcium imaging analysis with CaImAn and Suite2p
bids-specification
Brain Imaging Data Structure (BIDS) Specification
ibllib
IBL core shared libraries
qsiprep
Preprocessing and reconstruction of diffusion MRI
brainstorm3
Brainstorm software: MEG, EEG, fNIRS, ECoG, sEEG and electrophysiology
abcd-hcp-pipeline
bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
element-optogenetics
DataJoint Element for optogenetic experiments
element-animal
DataJoint Element for Animal Management - NIH U24
element-lab
DataJoint Element for Lab Management - NIH U24
element-deeplabcut
DataJoint Element for behavioral analysis with DeepLabCut
sleap
A deep learning framework for multi-animal pose tracking.
element-facemap
DataJoint Element for behavioral analysis with Facemap
element-electrode-localization
DataJoint Element for localizing Neuropixels electrodes
neuropixel-utils
Utilities for managing Neuropixel datasets and Kilosort results
map-ephys
Mesoscale activity ephys ingest schema
ecephys_spike_sorting
Modules for processing extracellular electrophysiology data from Neuropixels probes
IBL-pipeline
DataJoint pipeline for IBL project
datajoint-utilities
A general purpose repository containing all generic tools/utilities surrounding the DataJoint ecosystem. These can be candidates for DataJoint plugins
sci-viz
Generic visualization framework for building dashboarding capabilities for DataJoint pipelines.
birdsonganalysis
Python library to make bird song analysis, usually made with Sound Analysis Pro
neurocaas
IaC codebase for the NeuroCAAS Platform