JaerongA

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JaerongA's starred repositories

DataQualityDashboard

A tool to help improve data quality standards in observational data science.

Language:JavaScriptApache-2.013400

PCORnet2OMOP_ETL_tool

This is an ETL tool for converting PCORnet CDM into OMOP CDM

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AI-Scientist

The AI Scientist: Towards Fully Automated Open-Ended Scientific Discovery 🧑‍🔬

Language:Jupyter NotebookApache-2.0720300

overleaf

A web-based collaborative LaTeX editor

Language:JavaScriptAGPL-3.01376400

Vocabulary-v5.0

Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

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CommonDataModel

Definition and DDLs for the OMOP Common Data Model (CDM)

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fastplotlib

Next-gen fast plotting library running on WGPU using the pygfx rendering engine

Language:PythonApache-2.039200

Muse

Code for localization of mouse ultrasonic vocalizations using a microphone array

Language:Matlab1000

cognita

RAG (Retrieval Augmented Generation) Framework for building modular, open source applications for production by TrueFoundry

Language:PythonApache-2.0313600

BluePyOpt

Blue Brain Python Optimisation Library

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netneurotools

Useful tools from the Network Neuroscience Lab

Language:PythonBSD-3-Clause5700

openscope_databook

OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈

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cloudbeaver

Cloud Database Manager

Language:TypeScriptApache-2.0335700

bluesky

experiment orchestration and data acquisition

Language:PythonBSD-3-Clause14600

data-engineer-handbook

This is a repo with links to everything you'd ever want to learn about data engineering

mne-bids

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

Language:PythonBSD-3-Clause13100

spotube

🎧 Open source Spotify client that doesn't require Premium nor uses Electron! Available for both desktop & mobile!

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mage-ai

🧙 Build, run, and manage data pipelines for integrating and transforming data.

Language:PythonApache-2.0768900

OpenVoice

Instant voice cloning by MIT and MyShell.

Language:PythonMIT2827500

rosettasciio

Python library for reading and writing scientific data format

Language:PythonGPL-3.04600

multitaper

Multitaper codes translated into Python.

Language:Jupyter NotebookMIT9300

BiaPy

Open source Python library for building bioimage analysis pipelines

Language:Jupyter NotebookMIT12100

bids-validator

Validator for the Brain Imaging Data Structure

Language:JavaScriptMIT18000

narrator

David Attenborough narrates your life

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KDEpy

Kernel Density Estimation in Python

Language:Jupyter NotebookBSD-3-Clause57500

bombcell

Automated quality control, curation and neuron classification of spike-sorted electrophysiology data

Language:MATLABGPL-3.010300

erplab

ERPLAB Toolbox is a free, open-source Matlab package for analyzing ERP data. It is tightly integrated with EEGLAB Toolbox, extending EEGLAB’s capabilities to provide robust, industrial-strength tools for ERP processing, visualization, and analysis. A graphical user interface makes it easy for beginners to learn, and Matlab scripting provides enormous power for intermediate and advanced users.

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hMRI-toolbox

A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)

Language:MATLABGPL-2.05800

cnn-ripple

CNN-ripple is a 1D convolutional neural network (CNN) operating over high-density LFP recordings to detect hippocampal SWR both offline and online.

Language:PythonGPL-3.01600

bids-starter-kit

Collection of tutorials, wikis, and templates to get you started with creating BIDS compliant datasets

Language:MATLABCC-BY-4.025900