Giters

JULIELab / gepi

GePI (GEne - Protein Interactions) is a web portal for quick and convenient access to gene - protein interaction mentions automatically extracted from the biomedical literature, i.e. PubMed and PubMed Central (Open Access Subset).

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

bionlpinteractionsmolecularppiretrievalwebapplication

GePI

GePi (GEne - Protein Interaction) is a web portal that offers access to interactions between genes and gene products automatically extracted from the PubMed and the open access subset of PubMed Central.

It is the subject of the following publication: Erik Faessler, Udo Hahn, Sascha Schäuble, GePI: large-scale text mining, customized retrieval and flexible filtering of gene/protein interactions, Nucleic Acids Research, Volume 51, Issue W1, 5 July 2023, Pages W237–W242, https://doi.org/10.1093/nar/gkad445

Please find the main code and documentation in the gepi/ subdirectory.

About

GePI (GEne - Protein Interactions) is a web portal for quick and convenient access to gene - protein interaction mentions automatically extracted from the biomedical literature, i.e. PubMed and PubMed Central (Open Access Subset).

bionlpinteractionsmolecularppiretrievalwebapplication

License:GNU General Public License v3.0

Languages

Language:JavaScript 66.4%Language:Java 27.5%Language:Shell 2.3%Language:Perl 2.3%Language:Python 0.6%Language:CSS 0.6%Language:Dockerfile 0.2%Language:SCSS 0.1%Language:Less 0.0%