Heezch

WaveFunctionCollapse

Bitmap & tilemap generation from a single example with the help of ideas from quantum mechanics

testdisk

TestDisk & PhotoRec

dreamerv3

Mastering Diverse Domains through World Models

MolecularNodes

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

infiniteGPT

InfiniteGPT is a Python script that lets you input an unlimited size text into the OpenAI API. No more tedious copy & pasting. Long live multithreading!

snake-ai-pytorch

ppo-implementation-details

The source code for the blog post The 37 Implementation Details of Proximal Policy Optimization

serl

SERL: A Software Suite for Sample-Efficient Robotic Reinforcement Learning

rigid_transform_3D

motionplanning

Motion planning algorithm implementation

mmterm

View proteins and trajectories in the terminal

UAMMD

A CUDA project for Molecular Dynamics, Brownian Dynamics, Hydrodynamics... intended to simulate a very generic system constructing a simulation with modules.

torchmd-cg

Example to fit parameters and run CG simulations using TorchMD and Schnet

ufedmm

Unified Free Energy Dynamics (UFED) simulations with OpenMM

PPO-pytorch

This repository contains the source code pytorch realization of PPO for solving openai gym enviroments.

TSMD

Tree Search Molecular Dynamics Simulation

emDNA

Energy minimization software for DNA/proteins complexes by the Olson lab at Rutgers

torch_rl_experimenting

Trying out torchrl

RBB-NA

Rigid-Base-Biassing-for-Nucleic-Acids

Control-Theory-2024

wlcstat

WLC Statistics Package

genome-dashboard-python

Genome Dashboard is the logic behind a web-based prototype of a genomics dashboard, specifically designed to integrate informatics and 4D material studies of chromatin. Genome Dashboard unites our Interactive Chromatin Modeling (ICM) tools with the Biodalliance genome browser and the JSMol molecular viewer to rapidly fold any DNA sequence into atomic or coarse-grained models of DNA, nucleosomes or chromatin.

chemRL

Crystallization Process Design by Proximal Policy Optimization

coilmd

MD simulation for a coarse grained DNA model, parallelized by OpenMP

Transcriptionfactor_unbinding

This repository contains the starting structures and GROMACS input files to run molecular dynamics with NMR restraints on a complex between the transcriptionfactor LacI and different sequences of DNA

cgsimrd

CGSIMRD (Coarse Grained Simulation of RNA and DNA) is a set of scripts that aid in performing coarse grain simulations of RNA and DNA simulations using LAMMPS.

gromacs-2019.4-cg

gromacs with buckingham potential hacked to do various other things

prepomm

Tools to prepare an OpenMM simulation

PMCpy

PolyMC

Monte Carlo code for single molecule DNA simulations