Guangchuang Yu (GuangchuangYu)

GuangchuangYu

Geek Repo

Company:Southern Medical University

Location:Guangzhou, China

Home Page:https://yulab-smu.top

Twitter:@guangchuangyu

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Organizations
id-bioinfo
rbind
TreeViz
YuLab-SMU

Guangchuang Yu's starred repositories

ChatTTS

A generative speech model for daily dialogue.

Language:PythonLicense:AGPL-3.0Stargazers:31172Issues:180Issues:518

github-trends

🚀 Level up your GitHub profile readme with customizable cards including LOC statistics!

Language:PythonLicense:MITStargazers:10442Issues:8Issues:133

FriendsDontLetFriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

bioinformatics

:microscope: Path to a free self-taught education in Bioinformatics!

most-common-american-idioms

A book created by xiaolai with the help of ChatGPT and its TTS

Language:Jupyter NotebookStargazers:912Issues:5Issues:9

cellxgene

An interactive explorer for single-cell transcriptomics data

Language:JavaScriptLicense:MITStargazers:622Issues:32Issues:1396

Online_R_learning

Online R learning for applied statistics

immunedeconv

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

Language:RLicense:NOASSERTIONStargazers:445Issues:13Issues:91

TwoSampleMR

R package for performing 2-sample MR using MR-Base database

Language:RLicense:NOASSERTIONStargazers:420Issues:29Issues:419

amr

AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

Language:C++License:NOASSERTIONStargazers:264Issues:26Issues:116

awesome_spatial_omics

tools and notes for spatial omics

sylph

ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.

Language:RustLicense:MITStargazers:136Issues:3Issues:14

CuratedAtlasQueryR

Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.

Language:RLicense:GPL-3.0Stargazers:90Issues:5Issues:75

AMR

Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.

Language:RLicense:NOASSERTIONStargazers:83Issues:6Issues:126

ggplot-extension-club

A repository as a discussion place for extending the ggplot2 R package

License:MITStargazers:57Issues:8Issues:0

fanyi

Translate Words or Sentences via Online Translators

ggsc

🧠 Visualizing Single Cell and Spatial Transcriptomics

ProjectYulab

:next_track_button: Small coding tasks that enable you to participate in our development

dynplot

Visualising single-cell trajectories, including comparisons between two models 📈

Language:RLicense:NOASSERTIONStargazers:30Issues:2Issues:31

Cenote-Taker3

Discover and annotate the virome

Language:PythonLicense:MITStargazers:29Issues:1Issues:12

shinyscholar

A template for creating modular shiny applications that meet academic standards and are reproducible

Language:RLicense:GPL-3.0Stargazers:16Issues:3Issues:13

clusterProfiler_protocol

omics data analysis using clusterProfiler ;)

Language:RLicense:MITStargazers:10Issues:5Issues:1

aplotExtra

Creating composite plot using 'aplot'

Language:RStargazers:8Issues:2Issues:0

ggflow

Draw flow chart based on ggtree

Language:RStargazers:8Issues:1Issues:0

learnggtree

Tutorial for Learning 'ggtree'

Language:MakefileStargazers:7Issues:1Issues:0

rdpvis

Visualizing sequence break point

Language:RStargazers:7Issues:1Issues:0

sc2p

single cell to pathway

Language:RStargazers:6Issues:0Issues:0

ggtreeSpace

🕸️Exploring phylomorphospace using 'ggtree'

Language:RLicense:NOASSERTIONStargazers:5Issues:3Issues:1

simpleGO

Simple GO Enrichment Analysis

Language:RStargazers:4Issues:2Issues:0