FNNDSC / BCH's repositories
pl-topologicalcopy
A simple ChRIS 'ts' app to copy filtered output directories from a list of input plugin instances
pl-simpledsapp
Chris plugin app simpledsapp
microminc
Minimize container image of CIVET + MINC tools
pl-surfaces-fetus
Extract surface meshes from in-utero MRI
pl-abs
A ChRIS plugin to take the absolute value of numbers
pl-pfdo_med2img
A ChRIS plugin that can recursively walk down a directory tree and perform a 'med2image' on files in each directory (optionally filtered by some simple expression). Results of each operation are saved in output tree that preserves the input directory structure.
python-chrisclient
A python client for the ChRIS API.
kind-openobserve-action
A GitHub Action to ship Kubernetes logs to OpenObserve
upload-chris-plugin
A Github Action step to upload a ChRIS plugin to CUBE.
pl-dircopy
A Chris 'fs' plugin app to copy file/folders from a directory into a Chris' feed.
conda-multiarch
Multi-architecture docker images with Conda
tslide-presentations
A repo to house/keep tslide presentations.
pl-image_textIdentify
A ChRIS plugin to identify texts on images
pl-pfdicom_tagSub
Edit the values of a collection of user specified DICOM tags
miniChRIS-podman-compose
Run ChRIS using podman
pl-mgz2imageslices
A ChRIS plugin to convert `mgz` to `png` or `jpeg` which will also be useful in other project workflows
imaGenie
An image utility library
pl-shexec
A ChRIS DS plugin that uses `pfdo_run` to provide shell-like command functionality
pl-pfdorun
A ChRIS DS plugin that can perform somewhat arbitrary (housekeeping) operations on patterns of input directories and files.
ChRIS_store
Backend for ChRIS plugin apps store
pl-pfdicom_tagExtract
ChRIS DS plugin for the pfdicom_tagExtract utility
pl-gyrification-index
ChRIS plugin wrapper of CIVET gyrification_index
pl-NeSVoR-reconstruct
NeSVoR is a package for GPU-accelerated fetal brain MRI slice-to-volume reconstruction.
pfdicom_tagExtract
Extracts tags from DICOM files and generates various text-based reports.
pfdicom_tagSub
A DICOM tag substitution utility. Essentially allows for DICOM anonymization.
pl-fetal-brain-assessment
Quality Assessment tool for fetal brain MRIs, able to score each volume through a deep learning regression model. Developed using Python3 and Keras/Tensorflow framework.