FNNDSC / BCH's repositories
website-old
ChRIS Project Website
conda-multiarch
Multi-architecture docker images with Conda
pl-surfaces-fetus
Extract surface meshes from in-utero MRI
python-chrisclient
A python client for the ChRIS API.
miniChRIS-podman
Run ChRIS using Podman or Kubernetes
pl-fetal-brain-mask
Automatic masking of fetal brain images using deep learning
civet_example_datalad
Example CIVET output data
homebrew-mni2mz3
NOT CURRENTLY USED
imaGenie
An image utility library
kind-openobserve-action
A GitHub Action to ship Kubernetes logs to OpenObserve
microminc
Minimize container image of CIVET + MINC tools
miniChRIS-podman-compose
Run ChRIS using podman
pl-dircopy
A Chris 'fs' plugin app to copy file/folders from a directory into a Chris' feed.
pl-image_textIdentify
A ChRIS plugin to identify texts on images
pl-irtk-reconstruction
IRTK fetal brain MRI reconstruction. https://pubmed.ncbi.nlm.nih.gov/22939612/
pl-mgz2imageslices
A ChRIS plugin to convert `mgz` to `png` or `jpeg` which will also be useful in other project workflows
pl-pfdicom_tagSub
Edit the values of a collection of user specified DICOM tags
pl-pfdo_med2img
A ChRIS plugin that can recursively walk down a directory tree and perform a 'med2image' on files in each directory (optionally filtered by some simple expression). Results of each operation are saved in output tree that preserves the input directory structure.
pl-pfdorun
A ChRIS DS plugin that can perform somewhat arbitrary (housekeeping) operations on patterns of input directories and files.
pl-shexec
A ChRIS DS plugin that uses `pfdo_run` to provide shell-like command functionality
pl-simpledsapp
Chris plugin app simpledsapp
pl-topologicalcopy
A simple ChRIS 'ts' app to copy filtered output directories from a list of input plugin instances
pypx-rs
DICOMweb implementation for pypx-organized DICOM files
tslide-presentations
A repo to house/keep tslide presentations.
upload-chris-plugin
A Github Action step to upload a ChRIS plugin to CUBE.