Edinburgh Genome Foundry

Flametree

:fire: Python file and zip operations made easy

Taskpacker

:school_satchel: Simple schedule optimization library for Python

Proglog

:memo: Logs and progress bars manager for Python

lala

:earth_americas: Analyze and generate reports of web logs (NGINX)

sequenticon

:space_invader: Generate identicons for DNA sequences with Python

codon-usage-tables

:bar_chart: Codon usage tables in code-friendly format + Python bindings

CAB

:oncoming_taxi: The friendly Computational App Boilerplate. Django + Vue.JS + Redis queues + NginX

BandWagon

🎺 Plot DNA digestion band patterns with Python

genedom

Batch domestication of genetic parts with Python

Minotaor

An amino acid sequence annotator

tatapov

:paw_prints: DNA overhang misannealing data for Python

kappagate

:crystal_ball: Predict DNA assembly clone validity rates - powered by Kappa

zymp

:scissors: Design compact restriction sites arrays (python utility)

egf-shared-documents

:books: Shared slideshows, courses, etc. from the EGF

icebreaker

:snowflake: Python API for the JBEI-ICE sample manager

Dioscuri

Python package for working with Gemini WorkList (gwl) files

topkappy

:waxing_gibbous_moon: Pythonic bindings for the Kappa model simulation language

crecombio

A simple Cre, Flp and other site-specific recombination simulator

HowTo

:ledger: Short opinionated recipes, mostly for us.

Polymera

Polymera is a Python package for representing ambiguous sequences written with complement alphabets.

saboteurs

:bomb: Identify elements impairing success accross group experiments.

GeneAlloy

SynBioPython

General low-level API

DNA-scanner

Online tool for comparing prices and feasibility of DNA synthesis

Edinburgh-Genome-Foundry.github.io

:books: The EGF Software Website

ice

Web based Registry platform for managing synthetic biological parts

Plasmid_assessor

Plasmid assessment for Golden Gate cloning

tatapov_data

Data for the EGF Tatapov package

egf_xmltodict

Python module that makes working with XML feel like you are working with JSON

galaxy_synbiocad_dnaweaver

Archived Galaxy node for the manufacturing step of the SynBioCAD project. See latest version here: https://github.com/brsynth/DNAWeaver_SynBioCAD