Edinburgh-Genome-Foundry / DnaCauldron

:alembic: Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies

https://edinburgh-genome-foundry.github.io/DnaCauldron/

Edinburgh-Genome-Foundry/DnaCauldron Issues

Assembling fragments digested by different enzymes
Updated a month ago4
Unwanted case-sensitivity when indexing fragment against source record
Closed a year ago2
TypeError: StickyEndSeq.reverse_complement() got an unexpected keyword argument 'inplace'
Closed a year ago1
Purpose of OligoPairAnnealing class (oligo_annealing method in assembly plan)
Closed a year ago2
example with ladders
Updated 2 years ago1
Test fails with Biopython v1.79
Closed 2 years ago1
annotations crossing overhangs lost
Updated 2 years ago7
Linear assemblies?
Updated 2 years ago3
Annotating features with qualifiers
Closed 3 years ago1
Check parts assembling into enzyme sites
Closed 3 years ago
pdf_reports required but not installed by pip
Closed 3 years ago1
The tutorial uses parts as keyword argument for SequenceRepository but now its collections as dict of dict
Closed 3 years ago1
Choosing enzyme in AssemblyPlan.from_spreadsheet()
Closed 3 years ago
problem with snapgene_reader
Closed 5 years ago3