Deep-MI / fsqc

A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data

https://deep-mi.org

Deep-MI/fsqc Issues

WM snr discrepancy between qatools and mri_segstats --qa-stats
Closed 8 months ago1
Error installing fsqc via pip
Closed a year ago4
ERROR: screenshots/fornix module failed for subject ...
Closed a year ago8
--screenshots-html, --fornix-html not working
Closed a year ago3
no screenshots occurring
Closed a year ago6
Dockerfile: missing skimage dependency
Closed a year ago4
--shape flag not working
Closed a year ago3
Replace all FreeSurfer calls with python
Closed a year ago4
How open .stats file created by -outlier flag
Closed a year ago1
how to conduct group level consolidation on individual results?
Closed a year ago1
Brainprint running twice?
Closed a year ago1
Screenshots in reversed left/right orientation
Closed a year ago6
Dockerfile: fails to build due to kiwisolver dropping support for python 3.6.9 in 1.3.2
Closed a year ago1
Additional (inflated) surface views to match FS5 QA tool
Closed a year ago3
Check/Fix fastsurfer integration
Closed a year ago3
Check skull stripping
Closed a year ago2
unbuntu terminal frozen while encounter issue with surface overlaid
Closed 2 years ago49
Dockerfile encountered an issue
Closed 2 years ago4
Screenshots and fornix module failed for subject
Closed 2 years ago9
qatools-python singularity integration
Closed 2 years ago1
Usability of qatools installed in python environment for non-programmers
Closed 2 years ago2
Screenshots module fails to select (default) slices when voxel size different than 1mm
Closed 3 years ago1
A problem occurred with the surface overlays
Closed 3 years ago3
ValueError: array must not contain infs or NaNs
Closed 3 years ago4
about generating cortical parcellation screen shots & html files with consolidated screen shots
Closed 3 years ago2
processing multiple subjects from a list of subject IDs saved in a text file
Closed 3 years ago4
brainprintpython
Closed 3 years ago2
Normal range for computed values
Closed 3 years ago4
Can this scripts be used for FastSurfer processed structural MRI data?
Closed 4 years ago1