The Blue Brain Project's repositories
nexus-forge
Building and Using Knowledge Graphs made easy
Ultraliser
Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight inputs, segmented masks, skeletons of NGV morphologies and volumes.
luigi-tools
Extra tools to work with the Luigi library
neurodamus
A BBP Simulation Control application for NEURON
neuroagent
LLM agent made to communicate with different neuroscience related tools
BlueRecording
Creates weights files for extracellular recording in neurodamus
core-web-app
Open Brain Platform
appositionizer
Detect physical locations for synapses
spacktainers
Automated container building via AWS Codebuild, based on Spack
axon-synthesis
A package to synthesize artificial axons
bbp-atlas-pipeline
Set of processing modules that generate annotation volumes, brain region hierarchies, direction vectors, orientations and placement hints, cell density volumes for several cell types, CellComposition of the brain regions.
functionalizer
Create a functional connectome from physical connections between cells
Molsys-transcriptomic-atlas
This repository provides code to generate a transcriptomic atlas and its mapping to TME types.
nmodl-references
nmodl references
open-data-registry
A registry of publicly available datasets on AWS
region-grower
Neuronal synthesis in atlas-based regions
synthesis-workflow
Luigi workflow for neuronal synthesis