The Blue Brain Project

NeuroR

A collection of tools to repair morphologies

Currentscape

Currentscape is a Python tool enabling scientists to easily plot the currents in electrical neuron models. The code is based on the paper Alonso and Marder, 2019.

morph-tool

BluePyEModel

Blue Brain Python Electrical Modeling Pipeline

ConnectomeUtilities

Connectome Utilities

blueetl

Multiple simulations analysis tool

emodel-generalisation

Generalisation of electrical models of neurons with MCMC

vascpy

Python library for reading, writing, and manipulating large-scale vasculature graphs.

voxcell

Tools to work with voxel based brain atlases.

atlas-densities

Tools to compute densities in the context of brain atlases.

BlueRecording

Creates weights files for extracellular recording in neurodamus

core-web-app

Open Brain Platform

appositionizer

Detect physical locations for synapses

atlas-direction-vectors

Tools to compute direction vectors in the context of brain atlases.

connectome-manipulator

A connectome manipulation framework for SONATA circuits

diameter-synthesis

Synthesize diameters of neuronal morphologies

morphology-documentation

Morphology Specifications used at BBP

scholaretl

Scientific literature parsing tools

sonata-extension

atlas-enhancement

Tools to generate flatmaps of brain atlases & code to add barrel and barrel column annotations to Allen Mouse CCFv3

bbp-workflow

Automated pipelines of batch jobs using python and the luigi framework.

blueetl-core

Core transformations for BlueETL

cortexetl

entity-management

libsonatareport

neurodamus-models

Blue Brain simulation models

platform-docs

spacktainers

Automated container building via AWS Codebuild, based on Spack

brainbuilder

A tool to define the cells that will compose a circuit

cell-density-validations