BU-ISCIII / buisciii-tools

set of helper tools for bu-isciii management of its core services portfolio.

buisciii-tools

THIS REPO IS IN ACTIVE DEVELOPMENT.

BU-ISCIII provides a serie or services in its portfolio for supporting bioinformatics analysis to the labs in the Institute of Health Carlos III. bu-isciii tools is a set of helper tools for management of these bioinformatics analysis together with the LIMS (iSkyLIMS)

• Installation
• Usage
  • list
  • new-service
  • scratch
  • clean
  • copy_sfp
  • archive
  • bioinfo_doc
  • autoclean_sftp
• Aknowledgements

Installation

Bioconda

Soon

Pip

Soon

Development version

If you want to install the latest code in the repository:

conda create -n buisciii_dev pip
pip install --force-reinstall --upgrade git+https://github.com/bu-isciii/buisciii-tools.git@develop

Usage

Command-line

list

new-service

scratch

clean

copy_sftp

archive

bioinfo_doc

autoclean_sftp

Acknowledgements

Python package idea and design is really inspired in nf-core/tools.