Giters
BU-ISCIII

BU-ISCIII

Organization data from Github https://github.com/BU-ISCIII

GitHub:@BU-ISCIII

BU-ISCIII's repositories

chewBBACA

BSR-Based Allele Calling Algorithm

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chipseq-nf

Chromatin immunoprecipitation (ChIP-seq) analysis using BWA and MACS2 with QC steps.

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concat_lanes

Concatenation scripts fastq files outputted by bcl2fastq Illumina software. It is adapted to ISCIII-cluster using SGE for parallel sample processing.

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galaxy_production

Documentation and cofiguration of our galaxy production server

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PampuCaller

Open source R package for variant calling in deep sequencing of pcr-amplicons. It can be applied for detection of mosaicism in any sample including human samples or viral subpopulations.

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PlasmidI-GUI

PlasmidID web interface with django

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PyVCF

A Variant Call Format reader for Python.

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R_snippets

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