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Anna Schaar (AnnaChristina)

AnnaChristina

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Location:Munich

Twitter:@AnnaCSchaar

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scverse
theislab

Anna Schaar's starred repositories

single-cell-best-practices

https://www.sc-best-practices.org

Language:Jupyter NotebookLicense:NOASSERTIONStargazers:746Issues:18Issues:189

squidpy

Spatial Single Cell Analysis in Python

Language:PythonLicense:BSD-3-ClauseStargazers:428Issues:9Issues:505

cell2location

Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

Language:PythonLicense:Apache-2.0Stargazers:311Issues:7Issues:239

ncem

Learning cell communication from spatial graphs of cells

Language:PythonLicense:BSD-3-ClauseStargazers:102Issues:6Issues:35

scimilarity

A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.

Language:PythonLicense:NOASSERTIONStargazers:89Issues:12Issues:12

releases

Stargazers:73Issues:5Issues:3

nicheformer

Repository for Nicheformer: a foundation model for single-cell and spatial omics

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:53Issues:3Issues:16

geome

Language:PythonLicense:MITStargazers:16Issues:3Issues:23

ncem_tutorials

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:11Issues:4Issues:8

ncem_benchmarks

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:8Issues:4Issues:6