theislab / geome

https://geome.readthedocs.io/en/latest/

theislab/geome Issues

Proper pyproject.toml versioning and better run instructions
Updated 24 days ago
Fix the doc formatting and deploy the page
Updated 24 days ago
ValueError when subgraph creation with library_key for PyG datas
Closed 24 days ago1
closest kNN subgraph creation
Closed a month ago1
Edge weight integration
Closed a month ago2
Missing dependencies
Closed a year ago1
notebooks
Closed a year ago
anndata2data callable builder class
Closed a year ago4
Determining the behavior for all cases for splitting and loading
Closed a year ago8
Adding non-spatial split support
Closed a year ago
We should apply the mask attrs in the training loop to the loss function somehow.
Closed 2 years ago1
LinearSpatial implementation doesn't use Message Passing. Also not GPU compatible.
Closed 2 years ago2
Maybe creating a builder class instead of the adata2data_fn callable?
Closed 2 years ago1
Creating a data loader for Hartmann as AnnData objects
Closed 2 years ago1
Nodewise splitting of data
Closed 2 years ago1
Overall Train, Val, Test handling
Closed 2 years ago
LinearNCEM Train, Test, Val scheme for an experiment
Closed a year ago
LinearNCEM fully reproduce an experiment
Closed 2 years ago
Refactoring: Formatting in .py files and removing unused imports in .ipynp files
Closed 2 years ago1
Should there be one DataModule?
Closed 2 years ago1
Organize the repo with cookiecutter template for dependencies etc.
Closed 2 years ago
Add more dataset examples and apply to linear NCEM #1
Closed 2 years ago1