AlexsLemonade / training-modules

A collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.

AlexsLemonade/training-modules Issues

2024 June updates
Updated 2 months ago4
Negative size factors in 04-dimension_reduction_scRNA.Rmd
Closed 2 months ago
Update pathway-analysis notebooks
Updated 2 months ago
Check training materials for Bioc3.19 compatibility
Updated 2 months ago2
Use our new spellcheck action
Closed 2 months ago
Update actions to use new Docker images
Closed 2 months ago
Update materials to R 4.4/Bioc 3.19
Closed 3 months ago
Intro single-cell training fixes from June 2023
Closed 3 months ago10
Update to R 4.3 and Bioconductor 3.17
Closed 3 months ago
Update RStudio guide
Closed 10 months ago
Consider changing default branch to `main`
Updated a year ago
Update renv to 1.0
Closed a year ago
Clustering and dimension reduction slide updates
Closed a year ago
Update title in scRNA-seq clustering notebook
Closed a year ago1
plotReducedDim updates: The future is now
Closed a year ago1
Update scRNA-seq tximeta to note discrepancy with alevinQC
Closed a year ago1
Consider changing helper `md` files to `Rmd`
Closed a year ago
Update module_structure_detail.png
Closed a year ago
Training updates from May 2023
Closed a year ago10
Update plotReducedDim and friends for scAdvanced
Updated a year ago
Notebook enlivening
Closed a year ago2
Material Swap: Slide updates
Closed a year ago2
What is the future of rdrr?
Updated a year ago3
Ensure slide links are working
Closed a year ago1
Update directory_structure.txt
Closed a year ago4
Remove darmanis data from scRNA-seq
Closed a year ago
Update screenshots in intro notebook
Closed a year ago1
Ensure notebooks are ready for enlivening
Closed a year ago1
Consider new framework for cheatsheet PDF conversion
Closed a year ago2
Update pathway analysis to use DE results?
Updated a year ago
Material swap: exercise notebook links in READMEs
Closed a year ago
Material swap: Update cheatsheets
Closed a year ago2
Use `fs::dir_create()` in scIntro notebooks
Closed a year ago1
Cheatsheets reorganized by topic
Updated a year ago
Material swap: Introduction slide updates
Closed a year ago1
Slide screen shot updates
Closed a year ago2
Add scIntro roadmaps: clustering
Closed a year ago1
Add scIntro roadmaps: preprocessing
Closed a year ago1
Material swap: Switch training notebooks
Closed a year ago3
Material Swap: Update data in S3 and server
Closed a year ago2
Material swap: Setup content
Closed a year ago2
Use `fs::dir_create()` in scAdvanced notebooks
Updated a year ago
Anonymous function syntax in `05-clustering_markers_scRNA` notebook
Closed a year ago
scIntro Refresh for May 2023
Updated a year ago
SingleR into the cheatsheet
Closed a year ago2
Update scAdvanced Slides with new roadmap
Closed a year ago12
Final version and render of notebooks for 2023-march
Closed a year ago1
Updates for scAdvanced integration slides
Closed a year ago6
Lessen `purrr::map()` introduction in integration notebook
Closed a year ago
Add Patel 1B to diagrams
Closed a year ago