Alex's Lemonade Stand Foundation (AlexsLemonade)

Alex's Lemonade Stand Foundation

AlexsLemonade

Geek Repo

Childhood Cancer Data Lab of ALSF

Home Page:https://www.alexslemonade.org

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Alex's Lemonade Stand Foundation's repositories

OpenPBTA-analysis

The analysis repository for the Open Pediatric Brain Tumor Atlas Project

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OpenPBTA-manuscript

The manuscript repository for the Open Pediatric Brain Tumor Atlas Project

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refinebio-examples

Example workflows for refine.bio data

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refinebio-frontend

Frontend app for refine.bio

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cranlock

Lock our R dependencies to specific versions.

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exrcise

Selectively Excise Code Chunks for Exercises

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2020-may-training

Virtual training workshop for introducing pediatric cancer researchers to R, Tidyverse, and analysis of bulk RNA-seq data

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2021-june-training

Childhood Cancer Data Lab - 2021 June Training Workshop

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2023-chop-training

A workshop on version control, project management, and analytical code review

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2023-june-training

Website for Data Lab "Introduction to Single Cell RNA-Seq" Training, June 2023

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scRNA-seq_sandbox

Exploring some scRNA-seq methodologies, not a full-fledged pipeline ready for use

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2020-july-training

CCDL Virtual Training Workshop: July 27-31, 2020

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2020-june-training

CCDL Virtual Training Workshop: June 22-26, 2020

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2022-yi-workshops

Repository for Data Lab workshops at the 2022 Yi Summit

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2023-chop-training-demo

Repository for live demos associated with 2023 CHOP Workshop on code review

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2023-march-training

Website for Data Lab Advanced Single Cell Training March 2023

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2023-may-training

Website for Data Lab "Introduction to Single Cell RNA-Seq" Training, May 2023

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refinebio-processor-documentation

For tracking documentation of the methodology behind our processor tests: https://github.com/AlexsLemonade/refinebio/issues/2470

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responsible-data-sharing-figures

Contains original figures generated for https://www.nature.com/articles/s41576-020-0257-5

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rna-seq-accession-management

Scripts and data for managing the large number of RNA-Seq accessions we want to use

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scpcaData

Data files for testing scpcaTools

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snakemake-k8s-demo

Kurt's attempt to get snakemake jobs running on kubernetes

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training-txome-prep

Transcriptome index preparation for training-modules

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