Alex's Lemonade Stand Foundation's repositories
OpenPBTA-analysis
The analysis repository for the Open Pediatric Brain Tumor Atlas Project
OpenPBTA-manuscript
The manuscript repository for the Open Pediatric Brain Tumor Atlas Project
refinebio-examples
Example workflows for refine.bio data
refinebio-frontend
Frontend app for refine.bio
2020-may-training
Virtual training workshop for introducing pediatric cancer researchers to R, Tidyverse, and analysis of bulk RNA-seq data
2021-june-training
Childhood Cancer Data Lab - 2021 June Training Workshop
2023-chop-training
A workshop on version control, project management, and analytical code review
2023-june-training
Website for Data Lab "Introduction to Single Cell RNA-Seq" Training, June 2023
scRNA-seq_sandbox
Exploring some scRNA-seq methodologies, not a full-fledged pipeline ready for use
2020-july-training
CCDL Virtual Training Workshop: July 27-31, 2020
2020-june-training
CCDL Virtual Training Workshop: June 22-26, 2020
2022-yi-workshops
Repository for Data Lab workshops at the 2022 Yi Summit
2023-chop-training-demo
Repository for live demos associated with 2023 CHOP Workshop on code review
2023-march-training
Website for Data Lab Advanced Single Cell Training March 2023
2023-may-training
Website for Data Lab "Introduction to Single Cell RNA-Seq" Training, May 2023
refinebio-processor-documentation
For tracking documentation of the methodology behind our processor tests: https://github.com/AlexsLemonade/refinebio/issues/2470
responsible-data-sharing-figures
Contains original figures generated for https://www.nature.com/articles/s41576-020-0257-5
rna-seq-accession-management
Scripts and data for managing the large number of RNA-Seq accessions we want to use
snakemake-k8s-demo
Kurt's attempt to get snakemake jobs running on kubernetes
training-txome-prep
Transcriptome index preparation for training-modules