Alessio Milanese's repositories
classify-genomes
Classify a genome sequence according to the mOTUs/specI taxonomy
progenomes_classifier
a tool to classify genomes into the specI taxonomy
AlessioMilanese.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
bioconda-recipes
Conda recipes for the bioconda channel.
evaluate_AUC
Assess the potential dependence of the AUC on the number of positive cases
extract_regions_16s
A tool to extract variable regions from 16S gene sequences
FISH_probes
Scripts to design FISH probes for 16S sequences
krakenuniq
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
read_counter
Tool to count reads that map to a set of sequences
Threshold_q-gram_distance
a k-mer based string distance
MAPseq
highthroughput rRNA sequence classification and OTU mapping for metagenomic samples
RAMBL
Large-scale 16S gene assembly using metagenomic shotgun sequences
TAMPA
A collection of tools to visualize CAMI profiling outputs