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Aakankshas90

Aakankshas90

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julia

The Julia Programming Language

Language:JuliaLicense:MITStargazers:45002Issues:929Issues:24990

python-guide

Python best practices guidebook, written for humans.

Language:BatchfileLicense:NOASSERTIONStargazers:27979Issues:1388Issues:274

data-science-ipython-notebooks

Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.

Language:PythonLicense:NOASSERTIONStargazers:26734Issues:1617Issues:39

scipy

SciPy library main repository

Language:PythonLicense:BSD-3-ClauseStargazers:12711Issues:346Issues:10111

Data-Analysis

Data Science Using Python

Language:Jupyter NotebookLicense:MITStargazers:5113Issues:354Issues:61

WhirlwindTourOfPython

The Jupyter Notebooks behind my OReilly report, "A Whirlwind Tour of Python"

Language:Jupyter NotebookLicense:CC0-1.0Stargazers:3662Issues:222Issues:16

nextflow

A DSL for data-driven computational pipelines

Language:GroovyLicense:Apache-2.0Stargazers:2626Issues:85Issues:3124

PythonBooks

Directory of free Python ebooks

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hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

Language:TeXStargazers:633Issues:101Issues:415

jvarkit

Java utilities for Bioinformatics

Language:JavaLicense:NOASSERTIONStargazers:473Issues:27Issues:235

ensembl-vep

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

Language:PerlLicense:Apache-2.0Stargazers:439Issues:30Issues:1060

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Language:NextflowLicense:MITStargazers:351Issues:128Issues:649

syri

Synteny and Rearrangement Identifier

Language:CythonLicense:MITStargazers:306Issues:6Issues:248

GSoC-Accepted-Proposals

This repository serves as an archive of GSoC - Google Summer of Code accepted proposals of IIT (BHU), Varanasi students.

Stargazers:264Issues:4Issues:1

SnpEff

Language:JavaLicense:NOASSERTIONStargazers:236Issues:24Issues:490

learning_vcf_file

Learning the Variant Call Format

Language:PerlLicense:MITStargazers:136Issues:10Issues:2

GSoC

Documentation repository of Google Summer of Code (GSoC) project ideas for cBioPortal and related projects

Stargazers:106Issues:38Issues:111

nextflow-demos

Example Nextflow pipelines and programming techniques

Language:NextflowLicense:GPL-3.0Stargazers:95Issues:8Issues:1

distiller-nf

A modular Hi-C mapping pipeline

Language:GroovyLicense:MITStargazers:82Issues:10Issues:148

mirna

microRNA profiling pipeline

Language:PerlStargazers:69Issues:18Issues:5

Intro-to-R-flipped

Language:RStargazers:66Issues:11Issues:23

R-tricks

Tip and tricks for R

Stargazers:54Issues:16Issues:0

build-your-own-sqlite

Definition for the sqlite challenge.

Language:DockerfileLicense:MITStargazers:52Issues:1Issues:1

Iliad

ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications

Language:PythonLicense:MITStargazers:28Issues:1Issues:1

plot-VCF

visual analysis of your VCF files

Language:RLicense:MITStargazers:24Issues:1Issues:8

VCFshiny

Language:HTMLLicense:MITStargazers:21Issues:1Issues:6

bmc-microarray

This repo contains the knitr code for the paper: Gillespie, C. S., et al, 2010. Analysing yeast time course microarray data using BioConductor: a case study using yeast2 Affymetrix arrays BMC Research Notes, 3:81.

Language:TeXStargazers:13Issues:3Issues:2

snp_location

testing where SNP are in the humain genom

Language:RStargazers:12Issues:2Issues:1

vcfR_documentation

Documentation for vcfR

Language:HTMLStargazers:10Issues:4Issues:2

Biostatistics-Guide

Biostatistics Guide

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