schneebergerlab / syri

Synteny and Rearrangement Identifier

https://schneebergerlab.github.io/syri/

schneebergerlab/syri Issues

keyerror
Updated 3 months ago3
Request for Guidance on Converting NOTALs to Presence in Syri Outputs
Updated 3 months ago3
Consult DUP/INVDP for details
Updated 3 months ago1
translocated to different chromosomes
Updated 3 months ago3
Huge chromosome problem
Closed 3 months ago6
How to identify breakpoint of large inversion
Updated 3 months ago3
ERROR - Incorrect CIGAR string found
Closed a year ago4
About InvOut and Inv breakpoints
Closed 4 months ago3
longer processing time for large genome?
Closed 4 months ago1
Removes 'low-quality alignments' - what does this mean?
Closed 4 months ago1
How long does it take to generate the result file?
Closed 4 months ago3
complicated region not detected correctly
Closed 4 months ago2
conda installation
Closed 4 months ago2
nearly identical HDRs
Updated 5 months ago2
Aligning bacterial genomes with different number of contigs
Closed 6 months ago2
What's the header of SyRI output
Closed 6 months ago1
KeyError: 'Chr1'
Closed 6 months ago1
ERROR - No syntenic region found for chromosome: chr15. This is potentially caused by the two assemblies having different strands for this chromosomes. Reverse complement the chromosome to ensure that the same strands are analysed. Exiting
Closed 6 months ago1
Syri doesn't deal with unequal chromosome comparison
Updated 6 months ago2
ImportError: libicui18n.so.56: cannot open shared object file: No such file or directory
Closed 6 months ago2
Sequence length calculation error
Closed 7 months ago6
error running syri: IndexError: list index out of range
Closed 8 months ago2
How to cite chroder?
Closed 8 months ago1
syri reported an error:Reading coords - ERROR - aDir can only have values 1
Closed a year ago2
Can't install on Ubuntu 22.04
Closed 8 months ago2
IndexError: list index out of range(direction)
Closed 8 months ago6
translocation ascross chromosomes
Closed 8 months ago1
chroder input format requirements
Closed 8 months ago2
delta-filter unsecssful
Closed 8 months ago2
Matplotlib issue
Closed 8 months ago3
Reading Coords - WARNING - Chromosomes IDs do not match.
Closed 8 months ago6
Inversion OR Duplication ?
Closed 8 months ago3
i was using syri with two genome files its give me a error
Closed 8 months ago3
SNP Finding error
Closed 8 months ago1
syri issues
Closed 8 months ago6
IndexError: list index out of range
Closed 8 months ago9
IndexError: list index out of range after fixchr
Closed 9 months ago
SAM read error for BAM file from minimap2
Closed 9 months ago3
Not able to compile v1.6.3 on Ubuntu 20.04
Updated 9 months ago3
Failure to compile on MacOS 13 / M1 Pro
Closed a year ago3
i have installed syri using conda but after running iam getting error in reading sam file i have used minimap2 to convert fna file to sam file
Closed a year ago4
i was trying to install syri but it ended up with too many warnings and error
Closed a year ago2
Syri not detecting inversions from dgenies
Closed a year ago4
i was trying to install syri
Closed a year ago
How can I get location information for unalignable regions?
Closed a year ago2
colour to non-aligned region
Closed a year ago1
syri process stopped
Closed a year ago4
Question of Plotsr
Closed a year ago1
Issue installing syri with bioconda
Closed a year ago2
getTSV - ERROR - Error in finding parent for SNP getTSV - ERROR - # 566892 2624868 1 2058353 chr01 chr1 Series([], )
Closed a year ago5