pcingola / SnpEff

pcingola/SnpEff Issues

Problem getting snfEff running
Updated 3 months ago
I am having problems with the snpEff during the build running process
Updated 3 months ago
.genome not found
Closed 3 months ago5
HGVS Nomenclature issues
Updated 3 months ago
Issues with SnpEff Assuming Circular Chromosomes in Eukaryotic Genome Analysis
Updated 3 months ago
Incorrect classification duplication variant as intron coding?
Updated 3 months ago1
Mutithreading mode is broken: Move to Java streams + lambdas
Updated 4 months ago
Does the absence of a gene in the results mean that it has no variation in the populations?
Updated 4 months ago
Problem with downlading genome
Closed 4 months ago
Error: Unknown option '-noCheckCds'
Updated 4 months ago
Is it possible to merge several vcf/csvs and htmls (splitting large vcf by chromosome)
Updated 4 months ago
WISH: Version-specific download links
Updated 4 months ago
Make building and using a custom database easier.
Updated 4 months ago
Database request: raccoon (Procyon lotor)
Updated 5 months ago
snpeff.config: Split into config, database of genomes/sources and codon table
Updated 5 months ago
Inconsistent return of ERROR_OUT_OF_CHROMOSOME_RANGE
Updated 5 months ago
problems with building database for CriGri1.0
Updated 5 months ago
Problems with building database: WARNING_EXON_NOT_FOUND
Updated 5 months ago
Different output when using -FileList
Updated 5 months ago
BND with chr in the ALT alleles are converted to upper case
Updated 5 months ago
Discrepancy of count for intron_variant effect and INTRON region
Updated 6 months ago
Potential LOF mutation being annotated as intergenic variant
Closed 8 months ago4
Latest v5.2b not correctly displayed nor linked on SnpEff's website
Updated 6 months ago
i was working on Variant Annotation ...the error was genes.gff not found
Updated 6 months ago2
Unable to download GRCh38.mane.1.2.refseq: "The specified blob does not exist"
Closed 6 months ago11
Security Vulnerability
Updated 7 months ago
Another snpEff regression between versions 5.0 and 5.1/5.2
Closed 7 months ago2
Change Log?
Closed 8 months ago3
Why bacteria genome has predicted intron/exon regions?
Closed 8 months ago2
Allele does not match allele in VCF
Closed 8 months ago1
Build tests are failing in Eclipse
Closed 8 months ago1
FATAL ERROR: No CDS checked.
Closed 8 months ago2
RUN snpEff-unable to access jarfile snpEff.jar
Closed 8 months ago1
Database links are down "blob does not exist"
Closed 8 months ago2
Which version of the annotations should I use for GRCh38DH?
Closed 8 months ago5
how to build a .gtf for simple ATG-to-stop codon CDS references
Updated 8 months ago1
Variant Calling Analysis for Oryza sativa Indica Group Genes (ASM465v1) and Clarification on Annotated Variant Files
Closed 8 months ago1
Annotation database selection
Closed 8 months ago1
FATAL ERROR: Failed to download database from [https://snpeff.blob.core.windows.net/databases/v5_1/snpEff_v5_1_CDC.zip, https://snpeff.blob.core.windows.net/databases/v5_0/snpEff_v5_0_CDC.zip]
Closed 8 months ago1
Release notes for snpEff5.1
Closed 8 months ago1
Annotate with multiple databases
Closed 8 months ago1
ERROR 409: Public access is not permitted on this storage account..
Closed 9 months ago2
ERROR 409 : Public access is not permitted for downloading binary or databases
Closed 9 months ago13
Can't download the databases of python bivittatus while using snpEff download
Updated 9 months ago1
Start codon incorrectly labelled
Updated 10 months ago
Not all variants are annotated with AF - expected or a problem?
Closed a year ago1
Database request
Updated a year ago1
cDNA position/length is not annotated in any UTR variants
Updated a year ago
mobile elements insertion could not be annotated
Updated a year ago
HGVSc annotation question
Updated a year ago