Alma Hernández de Rojas's repositories
An-Introduction-To-Applied-Bioinformatics
Interactive lessons in bioinformatics.
POGO_ML_workshop_genomics
POGO 2019 Workshop on Machine Learning and Artificial Intelligence in Biological Oceanographic Observations
16s-qiime2
Analysis of microbiome samples in CWL using QIIME2
16S_rRNA_bacterial_communities_analysis
The set of scripts for programming language R for analyzing genetic and taxonomic diversity of bacterial communities received by metagenomic data of 16S rRNA
AdvancedR
SIOB-296 Advanced R Programming
analysis_of_microbiome_community_data_in_r
This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://grunwaldlab.github.io/analysis_of_microbiome_community_data_in_r/
apuntesMaster
Apuntes estadística Master
classifier
RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
Dockerfiles
Docker projects for bioinformatics tools
EcoIndR
:exclamation: This is a read-only mirror of the CRAN R package repository. EcoIndR — Ecological Indicators
emp
Code repository of the Earth Microbiome Project.
Frontiers_2017
Supplement for Frontiers article
masame
Code to run the shiny functions for the MASAME suite
Metabarcoding_school_colombia
9th metabarcoding school - ML-based biomonitoring
MetagenomeCourse2019
Course material for the metagenomics course
microbiome
microbiome R package
MicrobiomeAnalystR
A companion R package for the MicrobiomeAnalyst web server
microbiomeSeq
An R package for microbial community analysis in an environmental context
mira
MIRA sequence assembler
mixs-legacy
Spreadsheet formatted MIxS standard template
NormqPCR
Analyse qPCR data including selection of optimal reference gene(s) and normalisation
pogo_bioobs
The Partnership for Observing the Global Ocean's 2019 Workshop on Machine Learning in Biological Observations
qiime
Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
RDPTools
Collection of commonly used RDP Tools for easy building
sci-hub
A simple extension for safari web browser to access papers
Tools-Microbiome-Analysis
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization