Alma Hernández de Rojas (AHdeRojas)

AHdeRojas

Geek Repo

Company:NC Spanish Institute of Oceanography - Oceanographic Center of Gijon

Location:Gijón - Spain

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Alma Hernández de Rojas's repositories

ampvis2

Tools for visualising amplicon data

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Art-culo-NGS-Malaga

Scripts for the manuscript Assessment of short-term spatio-temporal variability in mesozooplankton communities’ structure integrating microscopy and multigene high-throughput sequencing

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CalfFecalMicrobiome

The study focused on a longitudinal study of the calf fecal microbiome from their arrival to the farm until 112 days. During this period, the 60 animals were treated divided in two treatment groups probiotic (SCFP) and control. Fecal samples were collected on the days 0, 28, 56, 84 and 112 for the microbiome analysis.

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cutadapt

Cutadapt removes adapter sequences from sequencing reads

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dorado

A LibTorch Basecaller for Oxford Nanopore Reads

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dryad-app

Codebase for the collaboration of Dryad and Dash data publication and curation services.

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emmeans

Estimated marginal means

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ggpicrust2

Make Picrust2 Output Analysis and Visualization Easier

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ggvegan

ggplot-based plots for vegan

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Keemei

Validate tabular bioinformatics file formats in Google Sheets

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LDM

Linear Decomposition Model

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libro-sig

Libro libre sobre Sistemas de Información Geográfica

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longitudinal_data_analysis

Scripts for the analysis of longitudinal data in R

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LongRead_tutorials

Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data

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metagenomics

Metagenomica

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MitoFinder

MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data

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MitoZ

MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes

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ph525x

ph525x. functions only, no data

License:MITStargazers:0Issues:0Issues:0

poretools

a toolkit for working with Oxford nanopore data

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qiime2

Official repository for the QIIME 2 framework.

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qiime2R

Import qiime2 artifacts to R

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quast

Genome assembly evaluation tool

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readytowear

Ready-made Taxonomic Weights Repository

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stamps2022

Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA

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stats-in-r

Statistical Analysis of Biological Data

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Tree-Root-Microbiome-Project

The scripts contained in this repository relate directly to the work conducted by the Tree Root Microbiome Project (TRMP) led by Dr Steve Wakelin.

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WRS

Wilcox' Robust Statistics

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