scvis
Interactive Single Cell RNA-seq Data Visualization in web browser.
My colleagues would like to explore gene expression in cells. I'm too lazy and tired to generate new plots for each interest gene. So, I setup a simplest web app using bokeh to help them. here is an example:
Usage
- run the app
bokeh serve scBokeh- Enter gene names or select catogorical option to show.
Dependency
- python >3
- bokeh
- colorect
- scanpy
- numpy
- scipy
TODO
I did not find a good example to generate voilinplot in Bokeh server application. However, the amazing bokeh could do this easy!