Wouter Saelens's repositories
2019-01-14_poster_dynbenchmark
Poster for the Single Cell Biology Keystone meeting, January 13─17, 2019
awesome-pipeline
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
closed-defence
🎓 Presentation for my closed PhD defence
GEOparse
Python library to access Gene Expression Omnibus Database (GEO)
kallistobustools
kallisto|bustools workflow for pre-processing single-cell RNA-seq data
kerneltree
Ultrafast interval trees from the kernel. Deprecated in favor of the NCLS.
patchwork
The Composer of ggplots
scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
scVI
Deep generative modeling for single-cell transcriptomics
single-cell-pseudotime
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
single-cell_sib_scilifelab
SIB/Scilifelab autumn school in single cell omics 2019.
sinto
Tools for single-cell data processing
sphinx-book-theme
A clean book theme for scientific explanations and documentation with Sphinx
sphinx-comments
hypothes.is interaction layer with Sphinx
TI_STREAM
STREAM repo for Topcoder Single-Cell Trajectory Inference Methods challenge https://www.topcoder.com/lp/single-cell