Deplancke's Lab

DeplanckeLab

Lausanne, Switzerland

http://deplanckelab.epfl.ch/

Deplancke's Lab's repositories

BRB-seqTools

Suite of tools for processing BRB-seq data

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ASAP

ASAP : Automated Single-cell Analysis Pipeline

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ChromatinHD

High-definition modeling of chromatin + transcriptomics data

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Live-seq

Live-seq

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Areg

Processing of single-cell (Fluidigm C1 and 10x) and population (Truseq and brbseq) RNA-seq data related to Areg discovery and characterisation in mouse subcutaneous stromal vascular fraction cells

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SSPCI

Somatic stem and progenitor cell identification based on single-cell RNA-sequencing data

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ASAP_web

ASAP web application

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BeversLitovchenko2018

Source code to support the paper: "Extensive mitochondrial population structure and haplotype-specific variation in metabolic phenotypes in the Drosophila Genetic Reference Panel"

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Chromatin_modules

Chromatin Modules across cell types.The code

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ChromatinHD_manuscript

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DisCo_source

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Frochaux_BouSleiman_2020

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SIB-ASAP-2023

Using ASAP for Single-Cell Analysis - 2023 Course

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SmartSeq2

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Meireles-Filho_Litovchenko2019

Source code to support the paper: “Extensive tissue-specific expression variation and novel regulators underlying circadian behavior”

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asap2_web

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BIO373_GeneticsAndGenomics

Biofinformatics support for the Genetics and Genomics class (BIO373)

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BiSS

Yeast one-hybrid screening for DNA-protein interactions

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BRB-seq

Code and scripts for reproducing figures of BRB-seq paper

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Context-TFs

Material and source code for Kribelbauer et al.

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dgrpool

Scripts used for the DGRPool ELife manuscript

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dgrpool_web

DGRPool is a web application designed to serve as a comprehensive repository for Drosophila Genetic Reference Panel (DGRP) phenotyping datasets.

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ENHPATHY4

ENHPATHY Event IV - Hands-on session on analyzing single-cell data

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FastReadCounter

Tool for fast counting of reads from BAM file into genomic ranges (GTF, BED, VCF)

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Numts_Aaeg

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projects

a list of all projects

MIT010

scfair

an initiative to standardize single-cell genomics data and promote findable, accessible, interoperable, and reusable single-cell data.

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TF-seq

Material and source code for TF-seq manuscript

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TFseqTools

A suite of tools for the pre-processing of TF-seq data

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updeplasrv1

Scripts for updeplasrv1 Web server (Dockerized)

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