This script creates a GUI in which the user can choose the setings to apply different Auto-threshold methods for segmentation. The script list the channels for Fluorescence, H&E and H-DAB images. Tooltips appear for each of the fields.
This discussion about Auto-Threshold started here: https://forum.image.sc/t/applying-automatic-threshold-method-in-qupath/88287
@yau-lim did the original core functionality of the Auto-Threshold in this script: https://github.com/yau-lim/QuPath-Auto-Threshold
@iviecomarti did the GUI around and modified a bit the functions for the Auto-TH.
@zindy removed deprecated libraries and made possible that the GUI appears as a tab.
The inspiration to do the GUI was the "Create thresholder" pane into QuPath. The idea was to make it familiar to the user.
Due some libs, the script just works for QuPath versions 0.5 or above.
For discussion visit this link: https://forum.image.sc/t/applying-automatic-threshold-method-in-qupath/88287
We hope you enjoy the GUI!